Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008485.1 Kokia drynarioides strain JFW-HI SEQ_123160, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:601 original size:40 final size:40

Alignment explanation


    Indices: 557--635  Score: 140
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        547 ACTATCTTAG

                                   *      *         
        557 TGTGCAGATCAGATTTAATTGCGTTGACATTTTTACTCAA
          1 TGTGCAGATCAGATTTAATTGCGCTGACATCTTTACTCAA

                                                   
        597 TGTGCAGATCAGATTTAATTGCGCTGACATCTTTACTCA
          1 TGTGCAGATCAGATTTAATTGCGCTGACATCTTTACTCA

        636 CATTATCTCT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  40   37  1.00

ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38


Consensus pattern (40 bp):   
TGTGCAGATCAGATTTAATTGCGCTGACATCTTTACTCAA
Done.