Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008496.1 Kokia drynarioides strain JFW-HI SEQ_123171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2662
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37


Found at i:1228 original size:20 final size:21

Alignment explanation


    Indices: 1195--1233  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1185 TAATAGTATA

                          *      
       1195 ATATTATATATTTATACTTCT
          1 ATATTATATATTTAAACTTCT

                               
       1216 ATATTAT-TATTTAAACTT
          1 ATATTATATATTTAAACTT

       1234 TTAATTGAGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20   10  0.59
  21    7  0.41

ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56


Consensus pattern (21 bp):   
ATATTATATATTTAAACTTCT
Done.