Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008508.1 Kokia drynarioides strain JFW-HI SEQ_123184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5606
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32


Found at i:12 original size:7 final size:7

Alignment explanation


    Indices: 1--62  Score: 82
    Period size: 6  Copynumber: 9.7  Consensus size: 7

                   
          1 AAAATGA
          1 AAAATGA

                   
          8 AAAATGA
          1 AAAATGA

                   
         15 AAAATGA
          1 AAAATGA

                   
         22 AAAATG-
          1 AAAATGA

                   
         28 AAAATG-
          1 AAAATGA

                   
         34 AAAATG-
          1 AAAATGA

                   
         40 AAAATG-
          1 AAAATGA

                   
         46 AAAAT-A
          1 AAAATGA

                   
         52 AAAAT-A
          1 AAAATGA

                 
         58 AAAAT
          1 AAAAT

         63 AAATGTACTA


Statistics
Matches: 54,  Mismatches: 0, Indels: 3
        0.95            0.00        0.05

Matches are distributed among these distances:
   6   34  0.63
   7   20  0.37

ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16


Consensus pattern (7 bp):   
AAAATGA

Found at i:3392 original size:17 final size:17

Alignment explanation


    Indices: 3370--3408  Score: 60
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       3360 CTCCACCTTG

                   *    *    
       3370 ACAAGAATTCTCTACGA
          1 ACAAGAACTCTCAACGA

                             
       3387 ACAAGAACTCTCAACGA
          1 ACAAGAACTCTCAACGA

                 
       3404 ACAAG
          1 ACAAG

       3409 TTCTCCACCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15


Consensus pattern (17 bp):   
ACAAGAACTCTCAACGA
Done.