Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008511.1 Kokia drynarioides strain JFW-HI SEQ_123187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7453
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Found at i:1402 original size:16 final size:15
Alignment explanation
Indices: 1381--1412 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1371 TACTAAAACT
1381 ATTTTTTTAAAATATA
1 ATTTTTTT-AAATATA
1397 ATTTTTTTAAATATA
1 ATTTTTTTAAATATA
1412 A
1 A
1413 AATTATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTTTTAAATATA
Found at i:1416 original size:17 final size:16
Alignment explanation
Indices: 1381--1416 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1371 TACTAAAACT
*
1381 ATTTTTTTAAAATATA
1 ATTTTTTTAAAATAAA
1397 ATTTTTTTAAATATAAA
1 ATTTTTTTAAA-ATAAA
1414 ATT
1 ATT
1417 ATTAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTTTTAAAATAAA
Found at i:1519 original size:31 final size:33
Alignment explanation
Indices: 1484--1556 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 33
1474 CCCAATTTCA
1484 TCTTCTTCCT-CATTTTT-CATCTAACACCACT
1 TCTTCTTCCTACATTTTTCCATCTAACACCACT
* * *
1515 TCTTCTGCTTACCATTTTTCCATCTAACATCACT
1 TCTTCTTCCTA-CATTTTTCCATCTAACACCACT
1549 TCTTCTTC
1 TCTTCTTC
1557 TCACATTCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 8 0.23
33 7 0.20
34 20 0.57
ACGTcount: A:0.18, C:0.34, G:0.01, T:0.47
Consensus pattern (33 bp):
TCTTCTTCCTACATTTTTCCATCTAACACCACT
Found at i:2234 original size:16 final size:14
Alignment explanation
Indices: 2207--2280 Score: 62
Period size: 16 Copynumber: 5.1 Consensus size: 14
2197 GATGATGATG
2207 ATTATAATTTTAAAA
1 ATTAT-ATTTTAAAA
2222 ATTTTATATTTTAAAA
1 A--TTATATTTTAAAA
2238 ATTA-ATTTT-AAA
1 ATTATATTTTAAAA
* *
2250 ATAATTTTTTAATAA
1 ATTATATTTTAA-AA
*
2265 TTCTATATTTTAAAA
1 AT-TATATTTTAAAA
2280 A
1 A
2281 AATAATTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
12 6 0.13
13 9 0.19
14 4 0.09
15 6 0.13
16 18 0.38
17 4 0.09
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTATATTTTAAAA
Found at i:2272 original size:42 final size:41
Alignment explanation
Indices: 2214--2298 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 41
2204 ATGATTATAA
* *
2214 TTTTAAAAATTTTATATTTT-AAAAATTAATTTTAAAATAATT
1 TTTTAAAAATTCTATATTTTAAAAAAATAATTTT--AATAATT
*
2256 TTTTAATAATTCTATATTTTAAAAAAATAATTTTAATAATT
1 TTTTAAAAATTCTATATTTTAAAAAAATAATTTTAATAATT
2297 TT
1 TT
2299 AAAATGATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
41 9 0.23
42 18 0.46
43 12 0.31
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (41 bp):
TTTTAAAAATTCTATATTTTAAAAAAATAATTTTAATAATT
Found at i:2285 original size:21 final size:23
Alignment explanation
Indices: 2260--2302 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2250 ATAATTTTTT
2260 AATAATTCT-AT-ATTTTAAAAA
1 AATAATTCTAATAATTTTAAAAA
*
2281 AATAATTTTAATAATTTTAAAA
1 AATAATTCTAATAATTTTAAAA
2303 TGATTTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 2 0.11
23 9 0.47
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
AATAATTCTAATAATTTTAAAAA
Found at i:2846 original size:46 final size:46
Alignment explanation
Indices: 2722--3491 Score: 545
Period size: 46 Copynumber: 16.9 Consensus size: 46
2712 AGATAATAGT
* * * * * *
2722 TTCAATTTCCCCCTCTCGA-TTAGGGGTAAAAGATTGGAAGATGGC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* * * *
2767 TTCAATCT-ACCC-CATG-GTT-GGGGTAAGAGATTGGATGGTGTC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* * *
2809 TTCAATCTACCCCCCTTGACTTAGGGGTAAAAGATTGGATGGTGGC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* * * *
2855 TTCAATTTG--CCTCATGA--TCGGGGTAAGAA-ATTGGATAGTATGTC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAA-AAGATTGGAT-G-GTGTC
2899 TTCAATCTAG-CCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGTC
1 TTCAATCT-GCCCCTCTTGACTTAGGGGTAAAAGATTGGAT-G-G-TGTC
* * * * * * *
2948 TTCAATTTGCCCCTCTTGAATTAAGGGTAAAAGATCGAATGATGGC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* * * * * * *
2994 TTCAATTTG-CCC-CATG--GTCGGGGTAAGAGATTGGGTGGTGTT
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* * *
3036 TTCAATCTGCCCTTCTTAACTTAGGGGTAAAAGATTGGATGGTGAC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* * * *
3082 TTTAATCTGCCCCTTTTGACTTAGGGGTAAAAGGTTGGGTGGTGATGTC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAT-G-G-TGTC
* * * * *
3131 TTCAATTTGTCCCTCTTGACTTAGGGGTAAAATATTAGATGAT-TGC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGT-C
* * * * *
3177 TTCAATCTG--CTTCATG-GTTA-GGGTAAGAGATTGGATGGTATC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* *
3219 TTCAATCTGTCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
* *
3265 TTCAATCTG-CCC-CATGA--TAGGGGTAAGAA-ATTAGATAGTGTTGTC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAA-AAGATTGGAT-G-G-TGTC
* * * *
3310 TCCAATCTACCCTTCTTAACTTAGGGGTAAAAGATTGGATGGTGATGTC
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAT-G-G-TGTC
* * *
3359 TTCAATCTACACCTCTTTACTTAGGGGTAAAAGATTAGGTGATGGT-T-
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATT--G-GATGGTGTC
* * * * *
3406 TT-AATCTGCCCCTTTTAACTTAAGGGTAAAACATTAGATGGTAG-C
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGT-GTC
* *
3451 TTCAATCTGCCCTTCTTGACTTAGGGGTAAAAGATTAGATG
1 TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATG
3492 ATGATGTAAC
Statistics
Matches: 571, Mismatches: 110, Indels: 87
0.74 0.14 0.11
Matches are distributed among these distances:
42 106 0.19
43 25 0.04
44 42 0.07
45 32 0.06
46 201 0.35
47 8 0.01
48 24 0.04
49 127 0.22
50 1 0.00
51 2 0.00
52 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (46 bp):
TTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGTC
Found at i:2935 original size:90 final size:88
Alignment explanation
Indices: 2722--2960 Score: 300
Period size: 88 Copynumber: 2.7 Consensus size: 88
2712 AGATAATAGT
* * * * * * * * *
2722 TTCAATTTCCCCCTCTCGA-TTAGGGGTAAAAGATTGGAAGATGGCTTCAATCTACCCCATGGTT
1 TTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGCTTCAATTTGCCCCATGATC
* *
2786 GGGGTAAGAGATTGGATGGTGTC
66 GGGGTAAGAAATTGGATGATGTC
* *
2809 TTCAATCTACCCCCCTTGACTTAGGGGTAAAAGATTGGATGGTGGCTTCAATTTGCCTCATGATC
1 TTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGCTTCAATTTGCCCCATGATC
2874 GGGGTAAGAAATTGGATAGTATGTC
66 GGGGTAAGAAATTGGAT-G-ATGTC
*
2899 TTCAATCTAGCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGTCTTCAATTTGCCCC
1 TTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTG--G-CTTCAATTTGCCCC
2961 TCTTGAATTA
Statistics
Matches: 130, Mismatches: 16, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
87 15 0.12
88 54 0.42
89 1 0.01
90 46 0.35
92 1 0.01
93 13 0.10
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (88 bp):
TTCAATCTACCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGCTTCAATTTGCCCCATGATC
GGGGTAAGAAATTGGATGATGTC
Found at i:3093 original size:88 final size:88
Alignment explanation
Indices: 2920--3354 Score: 385
Period size: 88 Copynumber: 4.8 Consensus size: 88
2910 CCTCTTGACT
* * * *
2920 TAGGGGTAAAAGATTGGATGGTGATGTCTTCAATTTGCCCCTCTTGAA-TTAAGGGTAAAAGATC
1 TAGGGGTAAGAGATTGGATGGTG-T-TCTTCAATCTG-CCCTCTT-AACTTAGGGGTAAAAGATT
* * * *
2984 GAATGATGGCTTCAATTTGCCCCATGG
62 GGATGGTGACTTCAATCTGCCCCATGG
* *
3011 TCGGGGTAAGAGATTGGGTGGTGTT-TTCAATCTGCCCTTCTTAACTTAGGGGTAAAAGATTGGA
1 TAGGGGTAAGAGATTGGATGGTGTTCTTCAATCTGCCC-TCTTAACTTAGGGGTAAAAGATTGGA
* * *
3075 TGGTGACTTTAATCTGCCCCTTTTGACT
65 TGGTGACTTCAATCTGCCCC--ATG--G
* * * * * * *
3103 TAGGGGTAAAAGGTTGGGTGGTGATGTCTTCAATTTGTCCCTCTTGACTTAGGGGTAAAATATTA
1 TAGGGGTAAGAGATTGGATGGTG-T-TCTTCAATCTG-CCCTCTTAACTTAGGGGTAAAAGATTG
* **
3168 GATGATTG-CTTCAATCTGCTTCATGG
63 GATG-GTGACTTCAATCTGCCCCATGG
* *
3194 TTA-GGGTAAGAGATTGGATGGT-ATCTTCAATCTGTCCCTCTTGACTTAGGGGTAAAAGATTGG
1 -TAGGGGTAAGAGATTGGATGGTGTTCTTCAATCTG-CCCTCTTAACTTAGGGGTAAAAGATTGG
* *
3257 ATGGTGGCTTCAATCTGCCCCATGA
64 ATGGTGACTTCAATCTGCCCCATGG
* * * * *
3282 TAGGGGTAAGAAATTAGATAGTGTTGTCTCCAATCTACCCTTCTTAACTTAGGGGTAAAAGATTG
1 TAGGGGTAAGAGATTGGATGGTG-T-TCTTCAATCTGCCC-TCTTAACTTAGGGGTAAAAGATTG
3347 GATGGTGA
63 GATGGTGA
3355 TGTCTTCAAT
Statistics
Matches: 281, Mismatches: 45, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
87 9 0.03
88 115 0.41
89 1 0.00
90 6 0.02
91 75 0.27
92 22 0.08
93 3 0.01
94 1 0.00
95 44 0.16
96 5 0.02
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (88 bp):
TAGGGGTAAGAGATTGGATGGTGTTCTTCAATCTGCCCTCTTAACTTAGGGGTAAAAGATTGGAT
GGTGACTTCAATCTGCCCCATGG
Found at i:3127 original size:183 final size:183
Alignment explanation
Indices: 2898--3498 Score: 562
Period size: 183 Copynumber: 3.3 Consensus size: 183
2888 GATAGTATGT
2898 CTTCAATCTAG-CCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGTCTTCAATTTGCCCCT
1 CTTCAATCT-GCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGTCTTCAATTTGCCCCT
* *
2962 CTTGAATTAAGGGTAAAAGATCGA-ATGATGGCTTCAATTTGCCCCATGGTCGGGGTAAGAGATT
65 CTTGAATTAAGGGTAAAAGAT-GAGATGATGGCTTCAATCTGCCCCATGGTCAGGGTAAGAGATT
* * *
3026 GGGTGGTGTTTTCAATCTG-CCCTTCTTAACTTAGGGGTAAAAGATTGGATGGTGA
129 GGATGGTATCTTCAATCTGTCCC-TCTTAACTTAGGGGTAAAAGATTGGATGGTGA
* * * * *
3081 CTTTAATCTGCCCCTTTTGACTTAGGGGTAAAAGGTTGGGTGGTGATGTCTTCAATTTGTCCCTC
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGTCTTCAATTTGCCCCTC
* * * * * ** *
3146 TTGACTTAGGGGTAAAATATTAGATGATTGCTTCAATCTGCTTCATGGTTAGGGTAAGAGATTGG
66 TTGAATTAAGGGTAAAAGATGAGATGATGGCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTGG
* *
3211 ATGGTATCTTCAATCTGTCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGG
131 ATGGTATCTTCAATCTGTCCCTCTTAACTTAGGGGTAAAAGATTGGATGGTGA
* * * * * * * *
3264 CTTCAATCTG-CCC-CATGA--TAGGGGTAAGAA-ATTAGATAGTGTTGTCTCCAATCTACCCTT
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAA-AAGATTGGATGGTGATGTCTTCAATTTGCCCCT
* * * * * ** *
3324 CTT-AACTTAGGGGTAAAAGATTGGATGGTGATGTCTTCAATCTACACCTCTTTACTTAGGGGTA
65 CTTGAA-TTAAGGGTAAAAGA-T-GA-GATGATGGCTTCAATCTGC-CC-C-ATGGTCA-GGGTA
* * * * * *
3388 AAAGATTAGGTGATGGT-T-TT-AATCTGCCCCTTTTAACTTAAGGGTAAAACATTAGATGGT-A
122 AGAGATT--G-GATGGTATCTTCAATCTGTCCCTCTTAACTTAGGGGTAAAAGATTGGATGGTGA
* * *
3449 GCTTCAATCTGCCCTTCTTGACTTAGGGGTAAAAGATTAGATGATGATGT
1 -CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGT
3499 AACTTTACTC
Statistics
Matches: 339, Mismatches: 58, Indels: 35
0.78 0.13 0.08
Matches are distributed among these distances:
178 1 0.00
179 45 0.13
180 3 0.01
181 4 0.01
182 20 0.06
183 164 0.48
184 4 0.01
185 4 0.01
186 55 0.16
187 4 0.01
188 6 0.02
189 8 0.02
190 21 0.06
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (183 bp):
CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGATGTCTTCAATTTGCCCCTC
TTGAATTAAGGGTAAAAGATGAGATGATGGCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTGG
ATGGTATCTTCAATCTGTCCCTCTTAACTTAGGGGTAAAAGATTGGATGGTGA
Found at i:3721 original size:96 final size:94
Alignment explanation
Indices: 3550--3884 Score: 494
Period size: 96 Copynumber: 3.5 Consensus size: 94
3540 CTATTACCTT
* *
3550 TTTTGACCCACTTCTCTGTATCTCATCAGGAAGAT-GGTTTGAAGTTTCGCTCCACTTCACTGTA
1 TTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGTTTGAAGTTTCGCT-CACTCCACTGTA
3614 ACCTCAGGGACATTGAGCTCTGCTTCATTG
65 ACCTCAGGGACATTGAGCTCTGCTTCATTG
*
3644 TTTTGATCCACTTTTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCGCTGCACTCCACTGT
1 TTTTGATCCACTTCTCTGTATCTCATCAGGAAGAT-GGGTTTGAAGTTTCGCT-CACTCCACTGT
3709 AACCTCAGGGACATTGAGCTCTGCTTCATTG
64 AACCTCAGGGACATTGAGCTCTGCTTCATTG
* * * *
3740 TTTTGATCCACTTCTTTGTATGTCATTAGGAAGATGGGTTTGAAGTTTCACTCTACTCCACTGTA
1 TTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGTTTGAAGTTTCGCTC-ACTCCACTGTA
* ** *
3805 ACC-CTAAGGATGTTGAGCTTTGCTTCATTG
65 ACCTC-AGGGACATTGAGCTCTGCTTCATTG
*
3835 TTTTGATCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTTTC
1 TTTTGATCCACTTCTCTGTATCTCATCAGGAAGAT-GGGTTTGAAGTTTC
3885 ATTGTTGTGA
Statistics
Matches: 219, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
94 35 0.16
95 82 0.37
96 102 0.47
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (94 bp):
TTTTGATCCACTTCTCTGTATCTCATCAGGAAGATGGGTTTGAAGTTTCGCTCACTCCACTGTAA
CCTCAGGGACATTGAGCTCTGCTTCATTG
Found at i:4871 original size:6 final size:6
Alignment explanation
Indices: 4860--4891 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
4850 TTGACCTCCC
*
4860 CTTTTT CTTTTT CTTTTT CTTTTC CTTTTT CT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT
4892 CTCTATCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:5770 original size:6 final size:5
Alignment explanation
Indices: 5736--5783 Score: 60
Period size: 5 Copynumber: 9.0 Consensus size: 5
5726 TGACTTTTCC
*
5736 TTCTT TTCTT TTCTT TTCTT TGCTT TTCTTT TTCTTT TTCCTT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTC-TT TTC-TT TT-CTT TTCTT
5784 GGGTTTTAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
5 24 0.62
6 14 0.36
7 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (5 bp):
TTCTT
Found at i:5874 original size:22 final size:22
Alignment explanation
Indices: 5829--5880 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
5819 CTTAACCCTT
* *
5829 TTCTTTTTCTTTTTTTCTTTCC
1 TTCTTTTTCTCTTTTTCTTACC
5851 TTCTTTTTCCTCTTTTT-TTACC
1 TTCTTTTT-CTCTTTTTCTTACC
*
5873 TTTTTTTT
1 TTCTTTTT
5881 GATAACACGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (22 bp):
TTCTTTTTCTCTTTTTCTTACC
Found at i:5878 original size:12 final size:11
Alignment explanation
Indices: 5825--5880 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
5815 TCATCTTAAC
5825 CCTTTTCTTTTT
1 CCTTTT-TTTTT
*
5837 CTTTTTTTCTTT
1 CCTTTTTT-TTT
*
5849 CC-TTCTTTTT
1 CCTTTTTTTTT
*
5859 CCTCTTTTTTTA
1 CCT-TTTTTTTT
5871 CCTTTTTTTT
1 CCTTTTTTTT
5881 GATAACACGT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
10 5 0.14
11 13 0.36
12 18 0.50
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (11 bp):
CCTTTTTTTTT
Done.