Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008512.1 Kokia drynarioides strain JFW-HI SEQ_123188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2115
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39


Found at i:510 original size:22 final size:22

Alignment explanation


    Indices: 485--526  Score: 59
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        475 AATAATAAAA

                                   
        485 AATTAAATATTATT-AATTTAAG
          1 AATTAAATATT-TTAAATTTAAG

                *               
        507 AATTTAATATTTTAAATTTA
          1 AATTAAATATTTTAAATTTA

        527 TTATATTTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21    2  0.11
  22   16  0.89

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (22 bp):   
AATTAAATATTTTAAATTTAAG

Found at i:532 original size:16 final size:16

Alignment explanation


    Indices: 487--536  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        477 TAATAAAAAA

                             
        487 TTAAATATTATTA-ATT
          1 TTAAAT-TTATTATATT

             *               
        503 TAAGAATTTA--ATATT
          1 TTA-AATTTATTATATT

                            
        518 TTAAATTTATTATATT
          1 TTAAATTTATTATATT

               
        534 TTA
          1 TTA

        537 TATATAATCA


Statistics
Matches: 28,  Mismatches: 2, Indels: 8
        0.74            0.05        0.21

Matches are distributed among these distances:
  14    7  0.25
  15    5  0.18
  16   13  0.46
  17    3  0.11

ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56


Consensus pattern (16 bp):   
TTAAATTTATTATATT
Done.