Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008514.1 Kokia drynarioides strain JFW-HI SEQ_123190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2724
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27


Found at i:1234 original size:14 final size:14

Alignment explanation


    Indices: 1215--1246  Score: 64
    Period size: 14  Copynumber: 2.3  Consensus size: 14

       1205 CCACAATGTA

                          
       1215 TAAATATTGAAGGT
          1 TAAATATTGAAGGT

                          
       1229 TAAATATTGAAGGT
          1 TAAATATTGAAGGT

                
       1243 TAAA
          1 TAAA

       1247 GTTGTTATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34


Consensus pattern (14 bp):   
TAAATATTGAAGGT
Done.