Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008519.1 Kokia drynarioides strain JFW-HI SEQ_123196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4141
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:3562 original size:40 final size:40

Alignment explanation


    Indices: 3507--3585  Score: 140
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       3497 AGAGATAATG

                    *                               
       3507 TGAGTAAAGATGTCAGCGCAATTAAATCTGATCTGCACAT
          1 TGAGTAAAAATGTCAGCGCAATTAAATCTGATCTGCACAT

                            *                      
       3547 TGAGTAAAAATGTCAGTGCAATTAAATCTGATCTGCACA
          1 TGAGTAAAAATGTCAGCGCAATTAAATCTGATCTGCACA

       3586 CTAAGATAGT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  40   37  1.00

ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28


Consensus pattern (40 bp):   
TGAGTAAAAATGTCAGCGCAATTAAATCTGATCTGCACAT

Done.