Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008520.1 Kokia drynarioides strain JFW-HI SEQ_123197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2216
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38


Found at i:424 original size:22 final size:23

Alignment explanation


    Indices: 399--450  Score: 79
    Period size: 22  Copynumber: 2.3  Consensus size: 23

        389 GAATTAAATA

                               *   
        399 ATAAATATTAGTTTT-TTATTAT
          1 ATAAATATTAGTTTTATTAGTAT

                                    
        421 ATAAATATTAGTTTTAATTAGTAT
          1 ATAAATATTAGTTTT-ATTAGTAT

                  
        445 ATAAAT
          1 ATAAAT

        451 GTAACATTAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  22   15  0.56
  24   12  0.44

ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52


Consensus pattern (23 bp):   
ATAAATATTAGTTTTATTAGTAT

Found at i:1005 original size:20 final size:21

Alignment explanation


    Indices: 978--1027  Score: 77
    Period size: 20  Copynumber: 2.5  Consensus size: 21

        968 TAAAAAAATA

                                 
        978 TATAAAAAATTATAGAA-ATT
          1 TATAAAAAATTATAGAATATT

               *                 
        998 TATTAAAAA-TATAGAATATT
          1 TATAAAAAATTATAGAATATT

                      
       1018 TATAAAAAAT
          1 TATAAAAAAT

       1028 CATTAAAATA


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  19    7  0.27
  20   19  0.73

ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36


Consensus pattern (21 bp):   
TATAAAAAATTATAGAATATT

Found at i:1534 original size:18 final size:18

Alignment explanation


    Indices: 1511--1550  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1501 GATTTTCTAT

                              
       1511 ATAATTTTCTAACTTTTA
          1 ATAATTTTCTAACTTTTA

                    *   *     
       1529 ATAATTTTGTAATTTTTA
          1 ATAATTTTCTAACTTTTA

                
       1547 ATAA
          1 ATAA

       1551 AATTTAAATG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55


Consensus pattern (18 bp):   
ATAATTTTCTAACTTTTA
Done.