Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008525.1 Kokia drynarioides strain JFW-HI SEQ_123202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1853
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:614 original size:11 final size:12

Alignment explanation


    Indices: 599--638  Score: 57
    Period size: 11  Copynumber: 3.4  Consensus size: 12

        589 AAAATGATTA

                        
        599 AATATTAAAAA-
          1 AATATTAAAAAT

                         
        610 AATATTTAAAAAT
          1 AATA-TTAAAAAT

                        
        623 AAT-TTAAAAAT
          1 AATATTAAAAAT

                 
        634 AATAT
          1 AATAT

        639 GGATGGGCCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  11   15  0.58
  12    8  0.31
  13    3  0.12

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (12 bp):   
AATATTAAAAAT
Done.