Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008527.1 Kokia drynarioides strain JFW-HI SEQ_123204, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5114
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:3766 original size:26 final size:26

Alignment explanation


    Indices: 3737--3806  Score: 72
    Period size: 26  Copynumber: 2.7  Consensus size: 26

       3727 TTTAGTTCAA

                           * *        
       3737 ACGAGCCTAGACAGAGTTTAGCTCTT
          1 ACGAGCCTAGACAGAATATAGCTCTT

                          *     *      
       3763 ACGAGTCC-AGACATAATATCGCTCTT
          1 ACGAG-CCTAGACAGAATATAGCTCTT

                       *       
       3789 ACGAG-CTAGATAGAATAT
          1 ACGAGCCTAGACAGAATAT

       3807 TTGCTCTACC


Statistics
Matches: 36,  Mismatches: 6, Indels: 5
        0.77            0.13        0.11

Matches are distributed among these distances:
  24    1  0.03
  25    9  0.25
  26   24  0.67
  27    2  0.06

ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26


Consensus pattern (26 bp):   
ACGAGCCTAGACAGAATATAGCTCTT

Done.