Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008528.1 Kokia drynarioides strain JFW-HI SEQ_123205, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1417
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30


Found at i:191 original size:21 final size:21

Alignment explanation


    Indices: 167--224  Score: 98
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        157 TAGAAATCAT

                                 
        167 ACTTGTATCGGTAGAACTAGC
          1 ACTTGTATCGGTAGAACTAGC

                                 
        188 ACTTGTATCGGTAGAACTAGC
          1 ACTTGTATCGGTAGAACTAGC

              **            
        209 ACAAGTATCGGTAGAA
          1 ACTTGTATCGGTAGAA

        225 ATTTGCACAG


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   35  1.00

ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Consensus pattern (21 bp):   
ACTTGTATCGGTAGAACTAGC
Done.