Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008533.1 Kokia drynarioides strain JFW-HI SEQ_123210, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12120
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:4441 original size:14 final size:14

Alignment explanation


    Indices: 4422--4455  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       4412 TTGTTATATG

                      *   
       4422 ATCAATTACACAGA
          1 ATCAATTACAAAGA

                          
       4436 ATCAATTACAAAGA
          1 ATCAATTACAAAGA

             *    
       4450 AGCAAT
          1 ATCAAT

       4456 ACATGTAAAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21


Consensus pattern (14 bp):   
ATCAATTACAAAGA

Found at i:11839 original size:16 final size:16

Alignment explanation


    Indices: 11816--11866  Score: 66
    Period size: 16  Copynumber: 3.2  Consensus size: 16

      11806 GATTGGAATG

                            
      11816 AATGAAATAAAATTGT
          1 AATGAAATAAAATTGT

             *       * *    
      11832 ATTGAAATAGAGTTGT
          1 AATGAAATAAAATTGT

                *           
      11848 AATGGAATAAAATTGT
          1 AATGAAATAAAATTGT

               
      11864 AAT
          1 AAT

      11867 CAATAATTTA


Statistics
Matches: 28,  Mismatches: 7, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  16   28  1.00

ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33


Consensus pattern (16 bp):   
AATGAAATAAAATTGT
Done.