Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008543.1 Kokia drynarioides strain JFW-HI SEQ_123220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4261
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39


Found at i:656 original size:14 final size:15

Alignment explanation


    Indices: 626--658  Score: 50
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        616 TAGGGTTTAA

                           
        626 AAATTTCAATGAATT
          1 AAATTTCAATGAATT

                      *    
        641 AAATTT-AATTAATT
          1 AAATTTCAATGAATT

                
        655 AAAT
          1 AAAT

        659 ATCTATTTTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14   11  0.65
  15    6  0.35

ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42


Consensus pattern (15 bp):   
AAATTTCAATGAATT
Done.