Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008547.1 Kokia drynarioides strain JFW-HI SEQ_123224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1968
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1114 original size:93 final size:94

Alignment explanation


    Indices: 957--1143  Score: 261
    Period size: 93  Copynumber: 2.0  Consensus size: 94

        947 GACACCCCTA

                                                              *       **     
        957 TTTATCAGATAAAAAAATTTAAAATTTTTCTGATGTTGGCCATTGCATAGTCGACACCTTTTTTT
          1 TTTATCAGATAAAAAAATTTAAAATTTTTCTGATGTTGGCCATTGCATAGCCGACACCCATTTTT

                           *             
       1022 ATCTGAATAAAAAATTAAATTTTTGGGTG
         66 ATCTGAATAAAAAATCAAATTTTTGGGTG

                 *              *          ** *                              
       1051 TTTATTAGATAAAAAAATTTCAAATTTTT-TTCTTTTGGCCATTGCAT-GACCGACACCCATTTT
          1 TTTATCAGATAAAAAAATTTAAAATTTTTCTGATGTTGGCCATTGCATAG-CCGACACCCATTTT

               *                          
       1114 TATTTGAATAAAAAATCAAATTTTTGGGTG
         65 TATCTGAATAAAAAATCAAATTTTTGGGTG

       1144 CTGGCCATAA


Statistics
Matches: 82,  Mismatches: 10, Indels: 3
        0.86            0.11        0.03

Matches are distributed among these distances:
  92    1  0.01
  93   54  0.66
  94   27  0.33

ACGTcount: A:0.34, C:0.12, G:0.13, T:0.42


Consensus pattern (94 bp):   
TTTATCAGATAAAAAAATTTAAAATTTTTCTGATGTTGGCCATTGCATAGCCGACACCCATTTTT
ATCTGAATAAAAAATCAAATTTTTGGGTG
Done.