Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008569.1 Kokia drynarioides strain JFW-HI SEQ_123247, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8142
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:7291 original size:9 final size:9

Alignment explanation


    Indices: 7273--7316  Score: 54
    Period size: 9  Copynumber: 4.9  Consensus size: 9

       7263 AAGCCGACAA

                 *   
       7273 AGAAGCAAG
          1 AGAAGAAAG

                     
       7282 AGAAGAAAG
          1 AGAAGAAAG

                     
       7291 AGAAG-AAG
          1 AGAAGAAAG

                 *   
       7299 AGAAGGAAG
          1 AGAAGAAAG

                     
       7308 AAGAAGAAA
          1 -AGAAGAAA

       7317 AATTTGCCCC


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
   8    8  0.26
   9   16  0.52
  10    7  0.23

ACGTcount: A:0.64, C:0.02, G:0.34, T:0.00


Consensus pattern (9 bp):   
AGAAGAAAG
Done.