Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008572.1 Kokia drynarioides strain JFW-HI SEQ_123250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8393
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:647 original size:15 final size:15

Alignment explanation


    Indices: 627--658  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        617 TTGAGGAGTT

                   *       
        627 GGTTTTGGTGGTGGA
          1 GGTTTTGATGGTGGA

                           
        642 GGTTTTGATGGTGGA
          1 GGTTTTGATGGTGGA

              
        657 GG
          1 GG

        659 ATTATTTTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.09, C:0.00, G:0.53, T:0.38


Consensus pattern (15 bp):   
GGTTTTGATGGTGGA

Found at i:7756 original size:15 final size:15

Alignment explanation


    Indices: 7736--7767  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       7726 TAAAAATAAT

                     *     
       7736 CCTCCACCATCAAAA
          1 CCTCCACCACCAAAA

                           
       7751 CCTCCACCACCAAAA
          1 CCTCCACCACCAAAA

              
       7766 CC
          1 CC

       7768 AACTCCTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.38, C:0.53, G:0.00, T:0.09


Consensus pattern (15 bp):   
CCTCCACCACCAAAA
Done.