Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008576.1 Kokia drynarioides strain JFW-HI SEQ_123254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9948
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35


Found at i:2869 original size:5 final size:5

Alignment explanation


    Indices: 2837--2868  Score: 50
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       2827 ATCTGCTGAC

                                                    
       2837 AAAAG AAAAG AAAAG AAAAG AAAA- AAAA- AAAA
          1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA

       2869 ATATATATAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   4    8  0.30
   5   19  0.70

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (5 bp):   
AAAAG

Found at i:2874 original size:2 final size:2

Alignment explanation


    Indices: 2869--2895  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       2859 AAAAAAAAAA

                                                    
       2869 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

       2896 CTCCATATGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.