Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008579.1 Kokia drynarioides strain JFW-HI SEQ_123257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9122
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:4228 original size:43 final size:43

Alignment explanation


    Indices: 4167--4250  Score: 159
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       4157 TTGTAACCTG

                               *                       
       4167 CTTATCTATGTACATTTGGGTGACAATTATTAACAAGTTGTTT
          1 CTTATCTATGTACATTTGGATGACAATTATTAACAAGTTGTTT

                                                     
       4210 CTTATCTATGTACATTTGGATGACAATTATTAACAAGTTGT
          1 CTTATCTATGTACATTTGGATGACAATTATTAACAAGTTGT

       4251 ATCTCCTGAA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  43   40  1.00

ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43


Consensus pattern (43 bp):   
CTTATCTATGTACATTTGGATGACAATTATTAACAAGTTGTTT

Found at i:6894 original size:23 final size:23

Alignment explanation


    Indices: 6864--6910  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       6854 AAGGAAAGTC

                                   
       6864 AGTTCCAATTTCTTCCAACTTCA
          1 AGTTCCAATTTCTTCCAACTTCA

                                   
       6887 AGTTCCAATTTCTTCCAACTTCA
          1 AGTTCCAATTTCTTCCAACTTCA

             
       6910 A
          1 A

       6911 AGGGAAGAAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.28, C:0.30, G:0.04, T:0.38


Consensus pattern (23 bp):   
AGTTCCAATTTCTTCCAACTTCA
Done.