Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008586.1 Kokia drynarioides strain JFW-HI SEQ_123264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4841
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34


Found at i:485 original size:50 final size:51

Alignment explanation


    Indices: 407--522  Score: 153
    Period size: 51  Copynumber: 2.3  Consensus size: 51

        397 TTAATAATGT

                     *   *   *    *                       * *  
        407 CATGCATTATGTAGCTCTCATGTTAGTT-AAGTTTGCATCATAAATTATGA
          1 CATGCATTAAGTAACTCCCATGATAGTTAAAGTTTGCATCATAAATAAAGA

                                                    *         *
        457 CATGCATTAAGTAACTCCCATGATAGTTAAAGTTTGCATCTTAAATAAAGT
          1 CATGCATTAAGTAACTCCCATGATAGTTAAAGTTTGCATCATAAATAAAGA

                           
        508 CATGCATTAAGTAAC
          1 CATGCATTAAGTAAC

        523 ACTTAAGGAA


Statistics
Matches: 57,  Mismatches: 8, Indels: 1
        0.86            0.12        0.02

Matches are distributed among these distances:
  50   24  0.42
  51   33  0.58

ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Consensus pattern (51 bp):   
CATGCATTAAGTAACTCCCATGATAGTTAAAGTTTGCATCATAAATAAAGA

Done.