Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000859.1 Kokia drynarioides strain JFW-HI SEQ_111972, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12100
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:10616 original size:29 final size:29

Alignment explanation


    Indices: 10556--10633  Score: 79
    Period size: 31  Copynumber: 2.6  Consensus size: 29

      10546 ATAAATATTA

                                       *  
      10556 AATTTATATATAAATTTTAGTTTATTATGT
          1 AATTTATATATAAATTTTAGTTTA-TACGT

                                           
      10586 AATTTGATATATAAATTTT-GATTTA-ACGT
          1 AATTT-ATATATAAATTTTAG-TTTATACGT

                     *         
      10615 AATTATATACATGAAATTT
          1 AATT-TATATAT-AAATTT

      10634 AAATTGCGGT


Statistics
Matches: 42,  Mismatches: 2, Indels: 8
        0.81            0.04        0.15

Matches are distributed among these distances:
  29   12  0.29
  30   13  0.31
  31   17  0.40

ACGTcount: A:0.40, C:0.03, G:0.08, T:0.50


Consensus pattern (29 bp):   
AATTTATATATAAATTTTAGTTTATACGT
Done.