Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008592.1 Kokia drynarioides strain JFW-HI SEQ_123270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10103
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:9116 original size:13 final size:13

Alignment explanation


    Indices: 9084--9148  Score: 51
    Period size: 14  Copynumber: 4.7  Consensus size: 13

       9074 AAATATTCAG

                        * 
       9084 AAAAAAATTAAGTT
          1 AAAAAAATTAA-AT

                         
       9098 AAAAAAATTAAAT
          1 AAAAAAATTAAAT

             *           
       9111 AGAAAAA-TAAAT
          1 AAAAAAATTAAAT

                             
       9123 AAACTAAAATGTAAAAT
          1 AAA--AAAAT-T-AAAT

               *     
       9140 AAATAAATT
          1 AAAAAAATT

       9149 TACAAATAAT


Statistics
Matches: 42,  Mismatches: 4, Indels: 10
        0.75            0.07        0.18

Matches are distributed among these distances:
  12    7  0.17
  13    7  0.17
  14   16  0.38
  15    4  0.10
  16    1  0.02
  17    7  0.17

ACGTcount: A:0.69, C:0.02, G:0.05, T:0.25


Consensus pattern (13 bp):   
AAAAAAATTAAAT

Found at i:9121 original size:21 final size:21

Alignment explanation


    Indices: 9097--9148  Score: 61
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       9087 AAAATTAAGT

                *                 
       9097 TAAAAAAATT-AAATAGAAAAA
          1 TAAATAAATTAAAAT-GAAAAA

                    *       *    
       9118 TAAATAAACTAAAATGTAAAA
          1 TAAATAAATTAAAATGAAAAA

                      
       9139 TAAATAAATT
          1 TAAATAAATT

       9149 TACAAATAAT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  21   22  0.85
  22    4  0.15

ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25


Consensus pattern (21 bp):   
TAAATAAATTAAAATGAAAAA
Done.