Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008600.1 Kokia drynarioides strain JFW-HI SEQ_123278, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2835
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:592 original size:18 final size:18

Alignment explanation


    Indices: 541--603  Score: 60
    Period size: 18  Copynumber: 3.5  Consensus size: 18

        531 CAACCTCTCC

                     *        
        541 TTTTT-TTCATTTTTTC-
          1 TTTTTCTTCTTTTTTTCA

                                 
        557 TATTTTCTAT-TTTCTTTTCA
          1 T-TTTTCT-TCTTT-TTTTCA

                            * 
        577 TTTTTCTTCTTTTTTTTA
          1 TTTTTCTTCTTTTTTTCA

                     
        595 TTTTTCTTC
          1 TTTTTCTTC

        604 ATTGAATCCG


Statistics
Matches: 39,  Mismatches: 2, Indels: 10
        0.76            0.04        0.20

Matches are distributed among these distances:
  16    1  0.03
  17    4  0.10
  18   18  0.46
  19   15  0.38
  20    1  0.03

ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78


Consensus pattern (18 bp):   
TTTTTCTTCTTTTTTTCA
Done.