Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008601.1 Kokia drynarioides strain JFW-HI SEQ_123279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25613
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:8042 original size:13 final size:13

Alignment explanation


    Indices: 8024--8049  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       8014 GCTTGGAGCA

                         
       8024 TTATGGATATCAG
          1 TTATGGATATCAG

                         
       8037 TTATGGATATCAG
          1 TTATGGATATCAG

       8050 AGGCATTAGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38


Consensus pattern (13 bp):   
TTATGGATATCAG

Found at i:12460 original size:12 final size:12

Alignment explanation


    Indices: 12439--12481  Score: 50
    Period size: 12  Copynumber: 3.6  Consensus size: 12

      12429 GGAGGAGAAG

                        
      12439 GAAGAAGAAAAA
          1 GAAGAAGAAAAA

                 *    * 
      12451 GAAGACGAAAGA
          1 GAAGAAGAAAAA

                    *   
      12463 GAAGAAGAGAAA
          1 GAAGAAGAAAAA

              *    
      12475 GAGGAAG
          1 GAAGAAG

      12482 TTCCTATCGC


Statistics
Matches: 25,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.63, C:0.02, G:0.35, T:0.00


Consensus pattern (12 bp):   
GAAGAAGAAAAA

Found at i:12481 original size:15 final size:15

Alignment explanation


    Indices: 12449--12477  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

      12439 GAAGAAGAAA

                           
      12449 AAGAAGACGAAAGAG
          1 AAGAAGACGAAAGAG

                           
      12464 AAGAAGA-GAAAGAG
          1 AAGAAGACGAAAGAG

      12478 GAAGTTCCTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    7  0.50
  15    7  0.50

ACGTcount: A:0.62, C:0.03, G:0.34, T:0.00


Consensus pattern (15 bp):   
AAGAAGACGAAAGAG
Done.