Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008605.1 Kokia drynarioides strain JFW-HI SEQ_123283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12778
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35


Found at i:68 original size:13 final size:12

Alignment explanation


    Indices: 37--73  Score: 56
    Period size: 12  Copynumber: 3.0  Consensus size: 12

         27 CTATTACAAG

                        
         37 TTGAATAATTAA
          1 TTGAATAATTAA

              *          
         49 TTTAATAATTGAA
          1 TTGAATAATT-AA

                        
         62 TTGAATAATTAA
          1 TTGAATAATTAA

         74 CTACTAAACA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  12   11  0.50
  13   11  0.50

ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43


Consensus pattern (12 bp):   
TTGAATAATTAA

Found at i:9001 original size:16 final size:18

Alignment explanation


    Indices: 8961--9011  Score: 61
    Period size: 17  Copynumber: 2.8  Consensus size: 18

       8951 TAACTTTAAT

                     *          
       8961 AAAATTAGAATTAGATTGAA
          1 AAAATTA-ATTTA-ATTGAA

                              
       8981 AAAATT-ATTTAATTG-A
          1 AAAATTAATTTAATTGAA

                           
       8997 AAAATTAATTTAATT
          1 AAAATTAATTTAATT

       9012 AATTAATATT


Statistics
Matches: 29,  Mismatches: 1, Indels: 5
        0.83            0.03        0.14

Matches are distributed among these distances:
  16    7  0.24
  17   12  0.41
  18    4  0.14
  20    6  0.21

ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39


Consensus pattern (18 bp):   
AAAATTAATTTAATTGAA
Done.