Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000862.1 Kokia drynarioides strain JFW-HI SEQ_111975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10096
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:5250 original size:13 final size:13

Alignment explanation


    Indices: 5232--5257  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       5222 AGGTCAGATT

                         
       5232 ACCTTCTTCTCTA
          1 ACCTTCTTCTCTA

                         
       5245 ACCTTCTTCTCTA
          1 ACCTTCTTCTCTA

       5258 TCTCCAATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46


Consensus pattern (13 bp):   
ACCTTCTTCTCTA
Done.