Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008622.1 Kokia drynarioides strain JFW-HI SEQ_123301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2253
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:1525 original size:31 final size:31

Alignment explanation


    Indices: 1490--1568  Score: 92
    Period size: 31  Copynumber: 2.6  Consensus size: 31

       1480 GGTTGAAAAA

                     *                      
       1490 GATCCAAATGTTTATTTTTCAA-TTGTGAAAG
          1 GATCCAAATTTTTATTTTTCAACTT-TGAAAG

                         *     *      *    
       1521 GATCCAAATTTTTTTTTTTTAACTTTTAAAG
          1 GATCCAAATTTTTATTTTTCAACTTTGAAAG

                               
       1552 G-T-CAAATTTTTATTTTT
          1 GATCCAAATTTTTATTTTT

       1569 ACTTACATTT


Statistics
Matches: 42,  Mismatches: 5, Indels: 4
        0.82            0.10        0.08

Matches are distributed among these distances:
  29   14  0.33
  30    1  0.02
  31   25  0.60
  32    2  0.05

ACGTcount: A:0.29, C:0.09, G:0.10, T:0.52


Consensus pattern (31 bp):   
GATCCAAATTTTTATTTTTCAACTTTGAAAG
Done.