Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008624.1 Kokia drynarioides strain JFW-HI SEQ_123303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2426
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31


Found at i:659 original size:31 final size:31

Alignment explanation


    Indices: 608--686  Score: 92
    Period size: 31  Copynumber: 2.6  Consensus size: 31

        598 AAATGTAAGT

                                            
        608 AAAAATAAAAATTT-GA-CCTTT-AAAAGTTA
          1 AAAAATAAAAATTTGGATCCTTTCAAAA-TTA

                 *                   *    *
        637 AAAAAAAAAAATTTGGATCCTTTCACAATTG
          1 AAAAATAAAAATTTGGATCCTTTCAAAATTA

                     *         
        668 AAAAATAAACATTTGGATC
          1 AAAAATAAAAATTTGGATC

        687 TTTTTCAACC


Statistics
Matches: 42,  Mismatches: 5, Indels: 4
        0.82            0.10        0.08

Matches are distributed among these distances:
  29   13  0.31
  30    2  0.05
  31   24  0.57
  32    3  0.07

ACGTcount: A:0.52, C:0.10, G:0.09, T:0.29


Consensus pattern (31 bp):   
AAAAATAAAAATTTGGATCCTTTCAAAATTA
Done.