Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008632.1 Kokia drynarioides strain JFW-HI SEQ_123312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3349
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:1560 original size:15 final size:17

Alignment explanation


    Indices: 1530--1561  Score: 50
    Period size: 15  Copynumber: 2.0  Consensus size: 17

       1520 TGTTTCTTTT

                             
       1530 CTAACTCTTATTGATTA
          1 CTAACTCTTATTGATTA

                             
       1547 CTAA-TCTT-TTGATTA
          1 CTAACTCTTATTGATTA

       1562 ATTCTTTTCA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    7  0.47
  16    4  0.27
  17    4  0.27

ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50


Consensus pattern (17 bp):   
CTAACTCTTATTGATTA
Done.