Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008639.1 Kokia drynarioides strain JFW-HI SEQ_123319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3066
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:1193 original size:47 final size:47

Alignment explanation


    Indices: 1118--1209  Score: 148
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1108 ATGGGTTAAA

                                *  *      *                
       1118 ACCAAAACAGCGTTGTTTTGGAGCTTAAGAGTCTAGACCAAAACAAT
          1 ACCAAAACAGCGTTGTTTTGAAGATTAAGAATCTAGACCAAAACAAT

                                                 *       
       1165 ACCAAAACAGCGTTGTTTTGAAGATTAAGAATCTAGATCAAAACA
          1 ACCAAAACAGCGTTGTTTTGAAGATTAAGAATCTAGACCAAAACA

       1210 TTGTCGTTTT


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  47   41  1.00

ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24


Consensus pattern (47 bp):   
ACCAAAACAGCGTTGTTTTGAAGATTAAGAATCTAGACCAAAACAAT

Found at i:2764 original size:17 final size:17

Alignment explanation


    Indices: 2742--2774  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       2732 ATTTAAAATA

                             
       2742 GATAAAATTAAATTTAG
          1 GATAAAATTAAATTTAG

                  *         
       2759 GATAAATTTAAATTTA
          1 GATAAAATTAAATTTA

       2775 AAAATAAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39


Consensus pattern (17 bp):   
GATAAAATTAAATTTAG
Done.