Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008642.1 Kokia drynarioides strain JFW-HI SEQ_123322, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22653
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:11806 original size:18 final size:16

Alignment explanation


    Indices: 11777--11821  Score: 54
    Period size: 18  Copynumber: 2.6  Consensus size: 16

      11767 TAAATTATTC

                            * 
      11777 TAAAATAATAATTATATT
          1 TAAAA-AATAATT-TAAT

                             
      11795 TATAAAAATAATTTAAT
          1 TA-AAAAATAATTTAAT

                      
      11812 TAAAAAATAA
          1 TAAAAAATAA

      11822 AGTTTTAGTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  16    8  0.32
  17    5  0.20
  18    9  0.36
  19    3  0.12

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (16 bp):   
TAAAAAATAATTTAAT
Done.