genome.fa.s8648.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008648.1 Kokia drynarioides strain JFW-HI SEQ_123329, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99090

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7637--7676	19	2.0	21	85	9	57	57	7	0	35	1.27
7702--7732	14	2.2	14	100	0	62	25	6	29	38	1.81
7739--7768	15	1.9	16	93	6	53	33	13	23	30	1.93
7736--7777	9	5.1	8	83	13	50	30	11	23	33	1.91
13937--13994	28	2.0	29	83	3	73	72	1	1	24	1.03
14285--14318	14	2.4	14	90	0	50	67	5	2	23	1.26
14256--14325	36	1.9	36	85	0	95	64	5	1	28	1.25
28080--28148	27	2.6	26	78	19	79	47	0	1	50	1.09
29008--29037	2	15.0	2	92	0	51	50	3	46	0	1.18
30234--30301	35	1.9	35	90	0	109	17	7	20	54	1.67
33636--33752	59	2.0	57	85	6	155	33	16	22	28	1.95
35005--35160	66	2.4	66	92	0	249	22	21	21	33	1.97
36368--36401	16	2.1	16	94	0	59	17	20	11	50	1.77
54581--54642	21	2.9	23	72	15	62	46	14	0	38	1.45
57344--57530	98	1.9	96	83	4	241	38	14	17	29	1.90
57890--58180	29	10.3	29	71	13	124	33	2	24	39	1.67
57878--58179	58	5.3	57	78	13	259	33	1	25	39	1.67
57900--58054	79	2.0	78	83	3	195	33	1	27	36	1.68
57989--58179	58	3.3	58	91	2	276	34	1	23	41	1.64
61025--61087	21	2.9	21	83	4	81	58	3	3	34	1.30
62157--62413	30	8.8	29	75	9	236	35	25	3	35	1.74
62147--62472	58	5.5	59	83	6	369	34	24	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62147--62472	118	2.8	115	81	7	320	34	24	5	35	1.78
65254--65285	3	10.7	3	100	0	64	34	31	0	34	1.58
78579--78622	21	2.0	22	86	4	63	59	9	4	27	1.48
86170--86198	3	9.7	3	100	0	58	0	34	0	65	0.93
88467--88498	2	16.0	2	100	0	64	50	0	0	50	1.00
90245--90272	3	9.3	3	100	0	56	67	0	0	32	0.91
96949--97011	20	3.2	20	95	0	108	34	26	6	31	1.82

Tables:   1

The End!