Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008658.1 Kokia drynarioides strain JFW-HI SEQ_123339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2948
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40


Found at i:754 original size:20 final size:19

Alignment explanation


    Indices: 710--746  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        700 TATTTGTTTT

                                
        710 GTAAAAAATAATTTCATCAA
          1 GTAAAAAATAATTTCA-CAA

                               
        730 -TAAAAAATAATTT-ACAA
          1 GTAAAAAATAATTTCACAA

        747 ACGTAAAATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  17    3  0.18
  18    1  0.06
  19   13  0.76

ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30


Consensus pattern (19 bp):   
GTAAAAAATAATTTCACAA
Done.