Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008660.1 Kokia drynarioides strain JFW-HI SEQ_123341, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2983
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:907 original size:18 final size:16

Alignment explanation


    Indices: 886--922  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        876 TGATAATTTC

                              
        886 AAATAAAATAATAAAATA
          1 AAATAAAAT-A-AAAATA

                            
        904 AAATAAAATAAAAATA
          1 AAATAAAATAAAAATA

               
        920 AAA
          1 AAA

        923 CAAGTTCCCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  16    9  0.47
  17    1  0.05
  18    9  0.47

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (16 bp):   
AAATAAAATAAAAATA

Found at i:919 original size:6 final size:5

Alignment explanation


    Indices: 886--922  Score: 51
    Period size: 5  Copynumber: 7.6  Consensus size: 5

        876 TGATAATTTC

                                                          
        886 AAATA AAAT- -AATA AAATA AAATA AAATAA AAATA AAA
          1 AAATA AAATA AAATA AAATA AAATA AAAT-A AAATA AAA

        923 CAAGTTCCCA


Statistics
Matches: 29,  Mismatches: 0, Indels: 6
        0.83            0.00        0.17

Matches are distributed among these distances:
   3    3  0.10
   5   21  0.72
   6    5  0.17

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (5 bp):   
AAATA
Done.