Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008661.1 Kokia drynarioides strain JFW-HI SEQ_123342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1933
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:1889 original size:28 final size:29

Alignment explanation


    Indices: 1865--1933  Score: 106
    Period size: 28  Copynumber: 2.4  Consensus size: 29

       1855 AGAACTTCTG

                                         
       1865 AAAATTACATTTTTA-CCCTAAACTTTCA
          1 AAAATTACATTTTTATCCCTAAACTTTCA

                  *                     *
       1893 AAAATTCCA-TTTTATCCCTAAACTTTCC
          1 AAAATTACATTTTTATCCCTAAACTTTCA

                         
       1921 AAAATTACATTTT
          1 AAAATTACATTTT


Statistics
Matches: 36,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  27    5  0.14
  28   28  0.78
  29    3  0.08

ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41


Consensus pattern (29 bp):   
AAAATTACATTTTTATCCCTAAACTTTCA
Done.