Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008662.1 Kokia drynarioides strain JFW-HI SEQ_123343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7283
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:4761 original size:51 final size:51

Alignment explanation


    Indices: 4642--4879  Score: 282
    Period size: 51  Copynumber: 4.6  Consensus size: 51

       4632 TTTCATTTAA

                                              **      *          *
       4642 TACTCACGATGACA-TATAGTCATCGGACCTCTTGTTCCGTATAGGAATTCATG
          1 TACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCGTAAAGG-ATTCATT

                                *          **               *   
       4695 TACTCACGATGACACTTAGTTATCGGACCTCACAATCCGT-AAGGATTTATT
          1 TACTCACGATGACACTTAGTCATCGGACCT-TTAATCCGTAAAGGATTCATT

                                *   *           *              
       4746 TACTCACGATGACACTTAGTAATCAGACCTTTAATCTGTAAAGGATTCATT
          1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT

                *                   *                          
       4797 TACTTACGATGACACTTAGTCATCAGACCTTTAATCCGTAAAGGATTCATT
          1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT

            *              *    *           
       4848 AACTCACGATGACACCTAGTTATCGGACCTTT
          1 TACTCACGATGACACTTAGTCATCGGACCTTT

       4880 TCGTTTACAG


Statistics
Matches: 161,  Mismatches: 22, Indels: 6
        0.85            0.12        0.03

Matches are distributed among these distances:
  50    6  0.04
  51  118  0.73
  52    3  0.02
  53   33  0.20
  54    1  0.01

ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32


Consensus pattern (51 bp):   
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT

Done.