Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008665.1 Kokia drynarioides strain JFW-HI SEQ_123347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8024
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31


Found at i:6363 original size:16 final size:18

Alignment explanation


    Indices: 6326--6361  Score: 56
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       6316 TTTTTTGAAT

                              
       6326 AATATATTGATATTAAAA
          1 AATATATTGATATTAAAA

                               
       6344 AATATATT-ATATTTAAAA
          1 AATATATTGATA-TTAAAA

       6362 TAGTGAAAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    3  0.18
  18   14  0.82

ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42


Consensus pattern (18 bp):   
AATATATTGATATTAAAA
Done.