Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008666.1 Kokia drynarioides strain JFW-HI SEQ_123348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13418
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33

Warning! 112 characters in sequence are not A, C, G, or T


Found at i:3345 original size:3 final size:3

Alignment explanation


    Indices: 3337--3379  Score: 77
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       3327 ACTTAAAATA

                                                                    
       3337 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT

       3380 GAGAAATGAT


Statistics
Matches: 39,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   3   36  0.92
   4    3  0.08

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Found at i:5920 original size:157 final size:157

Alignment explanation


    Indices: 5758--6071  Score: 628
    Period size: 157  Copynumber: 2.0  Consensus size: 157

       5748 TTATGGAATT

                                                                             
       5758 TTTAATTTCATGGAGGTTGGTCGCCCACAGTAAGATCACAACGTTGAAAACGAGAGTTCAGGGAA
          1 TTTAATTTCATGGAGGTTGGTCGCCCACAGTAAGATCACAACGTTGAAAACGAGAGTTCAGGGAA

                                                                             
       5823 ACCGCTCTAAGGCTATTTTTATTGGGTAATATATTTCTAAATAATAAAAATAAAATAAAACAAAA
         66 ACCGCTCTAAGGCTATTTTTATTGGGTAATATATTTCTAAATAATAAAAATAAAATAAAACAAAA

                                       
       5888 ACAGTGATTGACAGAGAGACCATAAAA
        131 ACAGTGATTGACAGAGAGACCATAAAA

                                                                             
       5915 TTTAATTTCATGGAGGTTGGTCGCCCACAGTAAGATCACAACGTTGAAAACGAGAGTTCAGGGAA
          1 TTTAATTTCATGGAGGTTGGTCGCCCACAGTAAGATCACAACGTTGAAAACGAGAGTTCAGGGAA

                                                                             
       5980 ACCGCTCTAAGGCTATTTTTATTGGGTAATATATTTCTAAATAATAAAAATAAAATAAAACAAAA
         66 ACCGCTCTAAGGCTATTTTTATTGGGTAATATATTTCTAAATAATAAAAATAAAATAAAACAAAA

                                       
       6045 ACAGTGATTGACAGAGAGACCATAAAA
        131 ACAGTGATTGACAGAGAGACCATAAAA

       6072 AGGCTGTCCC


Statistics
Matches: 157,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 157  157  1.00

ACGTcount: A:0.41, C:0.14, G:0.18, T:0.26


Consensus pattern (157 bp):   
TTTAATTTCATGGAGGTTGGTCGCCCACAGTAAGATCACAACGTTGAAAACGAGAGTTCAGGGAA
ACCGCTCTAAGGCTATTTTTATTGGGTAATATATTTCTAAATAATAAAAATAAAATAAAACAAAA
ACAGTGATTGACAGAGAGACCATAAAA
Done.