Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008670.1 Kokia drynarioides strain JFW-HI SEQ_123352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5453
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34


Found at i:5426 original size:101 final size:101

Alignment explanation


    Indices: 5251--5447  Score: 376
    Period size: 101  Copynumber: 2.0  Consensus size: 101

       5241 GATTCCATAA

                                        *                                    
       5251 ATTTCCACGTGGCAGGAAACAACTTCTTGTCATTGTTATCATTATTATTAATCATACAAATGTGC
          1 ATTTCCACGTGGCAGGAAACAACTTCTTATCATTGTTATCATTATTATTAATCATACAAATGTGC

                                                
       5316 TTGCACATTTTTATCATTTTTGGAAGATTTAGCAAG
         66 TTGCACATTTTTATCATTTTTGGAAGATTTAGCAAG

                    *                                                        
       5352 ATTTCCACTTGGCAGGAAACAACTTCTTATCATTGTTATCATTATTATTAATCATACAAATGTGC
          1 ATTTCCACGTGGCAGGAAACAACTTCTTATCATTGTTATCATTATTATTAATCATACAAATGTGC

                                           
       5417 TTGCACATTTTTATCATTTTTGGAAGATTTA
         66 TTGCACATTTTTATCATTTTTGGAAGATTTA

       5448 TTCTTG


Statistics
Matches: 94,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 101   94  1.00

ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41


Consensus pattern (101 bp):   
ATTTCCACGTGGCAGGAAACAACTTCTTATCATTGTTATCATTATTATTAATCATACAAATGTGC
TTGCACATTTTTATCATTTTTGGAAGATTTAGCAAG
Done.