Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008675.1 Kokia drynarioides strain JFW-HI SEQ_123357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2279
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32


Found at i:1985 original size:22 final size:21

Alignment explanation


    Indices: 1970--2011  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1960 AGAAAAATGA

                                  
       1970 ACTAACAAATAAAGAAACAAAG
          1 ACTAA-AAATAAAGAAACAAAG

                  *             
       1992 ACTAAATATAAAGAAACAAA
          1 ACTAAAAATAAAGAAACAAA

       2012 ATTAAAAGGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   14  0.74
  22    5  0.26

ACGTcount: A:0.69, C:0.12, G:0.07, T:0.12


Consensus pattern (21 bp):   
ACTAAAAATAAAGAAACAAAG
Done.