Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008676.1 Kokia drynarioides strain JFW-HI SEQ_123358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2487
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33


Found at i:1739 original size:16 final size:16

Alignment explanation


    Indices: 1718--1758  Score: 55
    Period size: 16  Copynumber: 2.6  Consensus size: 16

       1708 ATTTAAAAAG

                           *
       1718 AAAAGAAAAAAATGTT
          1 AAAAGAAAAAAATGTA

                      **    
       1734 AAAAGAAAAAGTTGTA
          1 AAAAGAAAAAAATGTA

                     
       1750 AAAAGAAAA
          1 AAAAGAAAA

       1759 TTAATTTTTT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  16   22  1.00

ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15


Consensus pattern (16 bp):   
AAAAGAAAAAAATGTA

Done.