Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008689.1 Kokia drynarioides strain JFW-HI SEQ_123371, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2118
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28


Found at i:1784 original size:17 final size:17

Alignment explanation


    Indices: 1762--1827  Score: 78
    Period size: 17  Copynumber: 3.9  Consensus size: 17

       1752 CTGTAGTATA

                  *          
       1762 ATTGTCCCTGCATTTTT
          1 ATTGTCACTGCATTTTT

                             
       1779 ATTGTCACTGCATTTTT
          1 ATTGTCACTGCATTTTT

                  *      * **
       1796 ATTGTCGCTGCATCTAC
          1 ATTGTCACTGCATTTTT

                   *       
       1813 ATTGTCATTGCATTT
          1 ATTGTCACTGCATTT

       1828 CCATATATAT


Statistics
Matches: 41,  Mismatches: 8, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  17   41  1.00

ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48


Consensus pattern (17 bp):   
ATTGTCACTGCATTTTT

Found at i:1800 original size:34 final size:34

Alignment explanation


    Indices: 1762--1827  Score: 87
    Period size: 34  Copynumber: 1.9  Consensus size: 34

       1752 CTGTAGTATA

                         * **                 
       1762 ATTGTCCCTGCATTTTTATTGTCACTGCATTTTT
          1 ATTGTCCCTGCATCTACATTGTCACTGCATTTTT

                  *                 *       
       1796 ATTGTCGCTGCATCTACATTGTCATTGCATTT
          1 ATTGTCCCTGCATCTACATTGTCACTGCATTT

       1828 CCATATATAT


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  34   27  1.00

ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48


Consensus pattern (34 bp):   
ATTGTCCCTGCATCTACATTGTCACTGCATTTTT
Done.