Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000869.1 Kokia drynarioides strain JFW-HI SEQ_111987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2657
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36


Found at i:1875 original size:55 final size:57

Alignment explanation


    Indices: 1792--1899  Score: 157
    Period size: 55  Copynumber: 1.9  Consensus size: 57

       1782 CTCTGGATTC

                           *      *          *                       
       1792 TTTTTTAGCACTTTTTTTTTGGGTTCAGATATGGGAAAATAAA-ACTTAATATGGTT
          1 TTTTTTAGCACTTTTCTTTTGGATTCAGATATGAGAAAATAAAGACTTAATATGGTT

                  *                                      *       
       1848 TTTTTTGGCA-TTTTCTTTTGGATTCAGATATGAGAAAATAAAGATTTAATAT
          1 TTTTTTAGCACTTTTCTTTTGGATTCAGATATGAGAAAATAAAGACTTAATAT

       1900 CAATGGCTAT


Statistics
Matches: 46,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  55   29  0.63
  56   17  0.37

ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46


Consensus pattern (57 bp):   
TTTTTTAGCACTTTTCTTTTGGATTCAGATATGAGAAAATAAAGACTTAATATGGTT
Done.