Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008703.1 Kokia drynarioides strain JFW-HI SEQ_123385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2018
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36


Found at i:1297 original size:18 final size:19

Alignment explanation


    Indices: 1274--1310  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1264 CGGTATTTTA

                               
       1274 TGAAAA-ATATCGATACCT
          1 TGAAAAGATATCGATACCT

                   *           
       1292 TGAAAAGGTATCGATACCT
          1 TGAAAAGATATCGATACCT

       1311 GAGTTTTAGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    6  0.35
  19   11  0.65

ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27


Consensus pattern (19 bp):   
TGAAAAGATATCGATACCT
Done.