Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008706.1 Kokia drynarioides strain JFW-HI SEQ_123388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9038
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:923 original size:16 final size:18

Alignment explanation


    Indices: 902--939  Score: 60
    Period size: 17  Copynumber: 2.2  Consensus size: 18

        892 TATACTTTAT

                   *          
        902 AAAAAATCAAAA-ATTAA
          1 AAAAAATAAAAATATTAA

                              
        919 AAAAAATAAAAATATTAA
          1 AAAAAATAAAAATATTAA

               
        937 AAA
          1 AAA

        940 CTCAACAAGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17   11  0.58
  18    8  0.42

ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18


Consensus pattern (18 bp):   
AAAAAATAAAAATATTAA

Done.