Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008708.1 Kokia drynarioides strain JFW-HI SEQ_123390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8553
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:751 original size:52 final size:52

Alignment explanation


    Indices: 635--805  Score: 164
    Period size: 52  Copynumber: 3.3  Consensus size: 52

        625 GCTAACTATT

                   *        *       *                    *    * 
        635 TGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATTACTATG
          1 TGTCATCATGAGTATAGGAATCCTCTACGGATTATGAGGTCCGATGACTAAG

             **                                        *        
        687 TACCATCATGAGTATAGGAATCCTCTACGGATTATGAGGTCCGGTGACTAAG
          1 TGTCATCATGAGTATAGGAATCCTCTACGGATTATGAGGTCCGATGACTAAG

                   *     *  *  *            ** *       *       * 
        739 TGTCATCTTGAGTGTATGATTCCT-TAACGGAACAAGAGGTCCAATGACTATG
          1 TGTCATCATGAGTATAGGAATCCTCT-ACGGATTATGAGGTCCGATGACTAAG

               *           
        791 TGTTATCATGAGTAT
          1 TGTCATCATGAGTAT

        806 CAAATGAAAT


Statistics
Matches: 95,  Mismatches: 23, Indels: 2
        0.79            0.19        0.02

Matches are distributed among these distances:
  51    1  0.01
  52   94  0.99

ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33


Consensus pattern (52 bp):   
TGTCATCATGAGTATAGGAATCCTCTACGGATTATGAGGTCCGATGACTAAG
Done.