Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008711.1 Kokia drynarioides strain JFW-HI SEQ_123393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3792
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:1031 original size:11 final size:9

Alignment explanation


    Indices: 998--1022  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        988 AGTTAAGTTT

                     
        998 TTTTATATG
          1 TTTTATATG

                     
       1007 TTTTATATG
          1 TTTTATATG

                   
       1016 TTTTATA
          1 TTTTATA

       1023 CTTGTTTTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68


Consensus pattern (9 bp):   
TTTTATATG

Found at i:2616 original size:17 final size:17

Alignment explanation


    Indices: 2594--2626  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       2584 TGTTAGTACA

                             
       2594 CATTGTCATTGCATTTC
          1 CATTGTCATTGCATTTC

                            
       2611 CATTGTCATTGCATTT
          1 CATTGTCATTGCATTT

       2627 TAGTGTTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.18, C:0.21, G:0.12, T:0.48


Consensus pattern (17 bp):   
CATTGTCATTGCATTTC
Done.