Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008714.1 Kokia drynarioides strain JFW-HI SEQ_123396, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2139
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38


Found at i:801 original size:21 final size:21

Alignment explanation


    Indices: 775--816  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        765 ACGATTATTC

                           *     
        775 CCTCTTTGACGATATGACATT
          1 CCTCTTTGACGATATAACATT

                                 
        796 CCTCTTTGACGATATAACATT
          1 CCTCTTTGACGATATAACATT

        817 TTTATGTTAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38


Consensus pattern (21 bp):   
CCTCTTTGACGATATAACATT
Done.