Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008725.1 Kokia drynarioides strain JFW-HI SEQ_123407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3410
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36


Found at i:1843 original size:16 final size:16

Alignment explanation


    Indices: 1822--1853  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1812 GAATTAACAC

                            
       1822 CATTTTACATCGATAT
          1 CATTTTACATCGATAT

                            
       1838 CATTTTACATCGATAT
          1 CATTTTACATCGATAT

       1854 ATTGCATACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44


Consensus pattern (16 bp):   
CATTTTACATCGATAT
Done.