Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008727.1 Kokia drynarioides strain JFW-HI SEQ_123409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2827
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36


Found at i:2356 original size:31 final size:31

Alignment explanation


    Indices: 2318--2381  Score: 128
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       2308 GCCGAGACGG

                                           
       2318 GTGTAACTCTTTTACCCAATCTATCAAACAA
          1 GTGTAACTCTTTTACCCAATCTATCAAACAA

                                           
       2349 GTGTAACTCTTTTACCCAATCTATCAAACAA
          1 GTGTAACTCTTTTACCCAATCTATCAAACAA

              
       2380 GT
          1 GT

       2382 CTATCACCCC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33


Consensus pattern (31 bp):   
GTGTAACTCTTTTACCCAATCTATCAAACAA
Done.