Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008729.1 Kokia drynarioides strain JFW-HI SEQ_123411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2118
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33


Found at i:1329 original size:13 final size:13

Alignment explanation


    Indices: 1311--1336  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1301 TTTTGTCGAG

                         
       1311 TTTCTTTTTTTTT
          1 TTTCTTTTTTTTT

                         
       1324 TTTCTTTTTTTTT
          1 TTTCTTTTTTTTT

       1337 CTCTTAAGAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (13 bp):   
TTTCTTTTTTTTT

Found at i:1511 original size:104 final size:105

Alignment explanation


    Indices: 1330--1534  Score: 313
    Period size: 104  Copynumber: 2.0  Consensus size: 105

       1320 TTTTTTTCTT

                    *                      *                         *       
       1330 TTTTTTTCTCTTAAGAATATATTGACCCTTTTGACGCGAAATGGAATGACAACCCAAGCACCCCA
          1 TTTTTTTCACTTAAGAATATATTGACCCTTTCGACGCGAAATGGAATGACAACCCAAACACCCCA

                 *                                  
       1395 TCCCGGTTACTCAGCCCAACACACTCCTAATTTATTATCA
         66 TCCCGATTACTCAGCCCAACACACTCCTAATTTATTATCA

                              *     **                          **       *   
       1435 TTTTTTT-ACTTAAGAATGTATTGGTCCTTTCGACGCGAAATGGAATGACAATTCAAACACTCCA
          1 TTTTTTTCACTTAAGAATATATTGACCCTTTCGACGCGAAATGGAATGACAACCCAAACACCCCA

                                                
       1499 TCCCGATTACTCAGCCCAACACACTCCTAATTTATT
         66 TCCCGATTACTCAGCCCAACACACTCCTAATTTATT

       1535 TTTATTATTT


Statistics
Matches: 90,  Mismatches: 10, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
 104   83  0.92
 105    7  0.08

ACGTcount: A:0.30, C:0.27, G:0.12, T:0.32


Consensus pattern (105 bp):   
TTTTTTTCACTTAAGAATATATTGACCCTTTCGACGCGAAATGGAATGACAACCCAAACACCCCA
TCCCGATTACTCAGCCCAACACACTCCTAATTTATTATCA
Done.